If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ), 'gf_id' => 'HOM05D000852', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000852' ), 'data_identifier' => 'HOM05D000852', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000852', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '700', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07780' => 'bna', 'A07p01950' => 'bna', 'Aa31LG8G15410' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3979' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4035' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.4036' => 'aag', 'Actinidia04229' => 'ach', 'Actinidia07323' => 'ach', 'Actinidia08348' => 'ach', 'Actinidia13262' => 'ach', 'Actinidia15695' => 'ach', 'Actinidia21995' => 'ach', 'Actinidia22018' => 'ach', 'Actinidia31681' => 'ach', 'Ah.09g229570' => 'amhyb', 'Ah.10g029190' => 'amhyb', 'Ah.16g107940' => 'amhyb', 'AL3G52040' => 'aly', 'AL7G21770' => 'aly', 'Aqoxy5G03814' => 'aox', 'Aqoxy7G02020' => 'aox', 'Aqoxy7G03227' => 'aox', 'Aqoxy7G03228' => 'aox', 'Aqoxy7G03229' => 'aox', 'Aqoxy7G03230' => 'aox', 'Aqoxy7G03721' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5E0JPW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5E3CW8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.66X7WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7NTE19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAFS43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D8H3GK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IN9LQ3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7G1JD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WHQ58B' => 'arhy', 'AT2G18660' => 'ath', 'AT4G30380' => 'ath', 'ATR0322G030' => 'atr', 'ATR0580G060' => 'atr', 'ATR0580G160' => 'atr', 'ATR0716G057' => 'atr', 'ATR0716G060' => 'atr', 'Atru.chr3.1929' => 'acertr', 'Atru.chr7.1248' => 'acertr', 'Atru.chr7.2276' => 'acertr', 'Atru.chr7.2362' => 'acertr', 'Atru.chr7.2363' => 'acertr', 'Atru.chr7.2395' => 'acertr', 'Atru.chr7.2396' => 'acertr', 'Atru.chr7.509' => 'acertr', 'AUR62011019' => 'cqu', 'AUR62016268' => 'cqu', 'AUR62033392' => 'cqu', 'AUR62039747' => 'cqu', 'AUR62039967' => 'cqu', 'AUR62039968' => 'cqu', 'AUR62039969' => 'cqu', 'AUR62040279' => 'cqu', 'BcaB03g16658' => 'bca', 'BcaC04g21479' => 'bca', 'BcaC06g36450' => 'bca', 'BcaC09g51828' => 'bca', 'BcaNung02993' => 'bca', 'BolC1t00849H' => 'bol', 'BolC7t40803H' => 'bol', 'BolC9t55988H' => 'bol', 'BraA01t00722Z' => 'bra', 'BraA07t27994Z' => 'bra', 'C01p08670' => 'bna', 'C07p04080' => 'bna', 'C09p31300' => 'bna', 'CAN.G1084.30' => 'can', 'CAN.G1618.1' => 'can', 'CAN.G199.40' => 'can', 'CAN.G584.59' => 'can', 'CANSAT11G0287' => 'cansat', 'CANSAT11G0825' => 'cansat', 'CANSAT11G0959' => 'cansat', 'CANSAT11G2091' => 'cansat', 'CANSAT56G2136' => 'cansat', 'CANSAT64G1813' => 'cansat', 'CARHR109250' => 'chi', 'CARHR238280' => 'chi', 'Carub.0003s3292' => 'cru', 'Carub.0007s1022' => 'cru', 'Ca_15712_v3' => 'car', 'Cc06_g13890' => 'ccan', 'Cc06_g13900' => 'ccan', 'Cc06_g13920' => 'ccan', 'Cc06_g13940' => 'ccan', 'Cc06_g13950' => 'ccan', 'Cc08_g00880' => 'ccan', 'Cc08_g00890' => 'ccan', 'Cc11_g01690' => 'ccan', 'CDE01G0509' => 'cde', 'CDE02G0559' => 'cde', 'CDE04G0105' => 'cde', 'CDE07G1040' => 'cde', 'CDE07G1510' => 'cde', 'Cfa006950' => 'cfa', 'Cfa012911' => 'cfa', 'Cfa013189' => 'cfa', 'Cfa013190' => 'cfa', 'Cfa013543' => 'cfa', 'Cfa021318' => 'cfa', 'Cfa023051' => 'cfa', 'Cfa023055' => 'cfa', 'Ciclev10009837m.g' => 'ccl', 'Ciclev10009872m.g' => 'ccl', 'Ciclev10009878m.g' => 'ccl', 'Ciclev10010198m.g' => 'ccl', 'Ciclev10010217m.g' => 'ccl', 'Ciclev10010291m.g' => 'ccl', 'Ciclev10010346m.g' => 'ccl', 'Ciclev10010378m.g' => 'ccl', 'Ciclev10010417m.g' => 'ccl', 'Ciclev10010575m.g' => 'ccl', 'Ciclev10010585m.g' => 'ccl', 'Ciclev10010610m.g' => 'ccl', 'Ciclev10010791m.g' => 'ccl', 'Ciclev10027031m.g' => 'ccl', 'CiPaw.03G239000' => 'cil', 'CiPaw.04G168900' => 'cil', 'CiPaw.07G056600' => 'cil', 'CiPaw.08G012200' => 'cil', 'CiPaw.08G039700' => 'cil', 'CiPaw.08G039800' => 'cil', 'CiPaw.08G039900' => 'cil', 'CiPaw.08G040000' => 'cil', 'CiPaw.08G133800' => 'cil', 'ClCG07G011990' => 'cla', 'ClCG08G013050' => 'cla', 'ClCG08G013250' => 'cla', 'ClCG10G000040' => 'cla', 'ClCG11G002790' => 'cla', 'COL.COLO4_03762' => 'col', 'COL.COLO4_03764' => 'col', 'COL.COLO4_12923' => 'col', 'COL.COLO4_15582' => 'col', 'COL.COLO4_16050' => 'col', 'COL.COLO4_18833' => 'col', 'COL.COLO4_19809' => 'col', 'COL.COLO4_19812' => 'col', 'COL.COLO4_23964' => 'col', 'COL.COLO4_23996' => 'col', 'COL.COLO4_27600' => 'col', 'COL.COLO4_30803' => 'col', 'COL.COLO4_30804' => 'col', 'COL.COLO4_37516' => 'col', 'Cpa.g.sc115.5' => 'cpa', 'Cpa.g.sc334.4' => 'cpa', 'Cpa.g.sc75.13' => 'cpa', 'Cpa.g.sc75.14' => 'cpa', 'Cpa.g.sc91.34' => 'cpa', 'CsaV3_2G002610' => 'csa', 'CsaV3_2G031780' => 'csa', 'CsaV3_2G031980' => 'csa', 'CsaV3_4G002160' => 'csa', 'CSS0009715' => 'camsi', 'CSS0016582' => 'camsi', 'CSS0019480' => 'camsi', 'CSS0026278' => 'camsi', 'CSS0026585' => 'camsi', 'CSS0045287' => 'camsi', 'DCAR_023512' => 'dca', 'DCAR_024475' => 'dca', 'DCAR_024476' => 'dca', 'Dinv11605' => 'din', 'Dinv11765' => 'din', 'Dinv15958' => 'din', 'Dinv15959' => 'din', 'Dinv18237' => 'din', 'Dinv18238' => 'din', 'Dinv30186' => 'din', 'Dinv41301' => 'din', 'Dinv41547' => 'din', 'Dinv42774' => 'din', 'Dinv42775' => 'din', 'Dinv42776' => 'din', 'Dinv42777' => 'din', 'Dinv42778' => 'din', 'Dinv42779' => 'din', 'Dinv42780' => 'din', 'Dinv42781' => 'din', 'Dinv42782' => 'din', 'Dinv43319' => 'din', 'Dinv43320' => 'din', 'Dinv43321' => 'din', 'Dinv43322' => 'din', 'Dinv43323' => 'din', 'Dinv43324' => 'din', 'Dinv43325' => 'din', 'Dinv43326' => 'din', 'Dinv43327' => 'din', 'Duzib150G0817' => 'dzi', 'Duzib168G0146' => 'dzi', 'Duzib168G1244' => 'dzi', 'Duzib168G1777' => 'dzi', 'Duzib187G0145' => 'dzi', 'Duzib187G0147' => 'dzi', 'Duzib187G0356' => 'dzi', 'Duzib187G1046' => 'dzi', 'Duzib187G1212' => 'dzi', 'Duzib187G1645' => 'dzi', 'Duzib192G0484' => 'dzi', 'Duzib235G0363' => 'dzi', 'Duzib248G0617' => 'dzi', 'ECA232G1641' => 'eca', 'ECA236G0904' => 'eca', 'ECA236G3135' => 'eca', 'ECA240G1338' => 'eca', 'ECA240G3560' => 'eca', 'ECA240G3980' => 'eca', 'ECA246G3317' => 'eca', 'ECA248G2772' => 'eca', 'EL10Ac2g02575' => 'bvu', 'EL10Ac6g14735' => 'bvu', 'EL10Ac8g18528' => 'bvu', 'EL10Ac8g18582' => 'bvu', 'EL10Ac8g18864' => 'bvu', 'Eucgr.B02666' => 'egr', 'Eucgr.B02700' => 'egr', 'Eucgr.B02703' => 'egr', 'Eucgr.C00204' => 'egr', 'Eucgr.C00205' => 'egr', 'Eucgr.C00206' => 'egr', 'Eucgr.C01794' => 'egr', 'Eucgr.C02445' => 'egr', 'Eucgr.C02792' => 'egr', 'Eucgr.C02797' => 'egr', 'Eucgr.C02798' => 'egr', 'Eucgr.E03548' => 'egr', 'Eucgr.K01244' => 'egr', 'Eucgr.L01931' => 'egr', 'FAN09G0018' => 'fan', 'FAN15G2630' => 'fan', 'FAN17G1076' => 'fan', 'FAN20G0545' => 'fan', 'FAN20G1470' => 'fan', 'FAN23G2365' => 'fan', 'FAN24G2103' => 'fan', 'FAN27G0222' => 'fan', 'FAN28G1046' => 'fan', 'FvH4_1g03970' => 'fve', 'FvH4_2g29730' => 'fve', 'FvH4_4g09540' => 'fve', 'FvH4_6g06300' => 'fve', 'Glyma.05G010800' => 'gma', 'Glyma.06G069400' => 'gma', 'Glyma.06G071400' => 'gma', 'Glyma.17G118500' => 'gma', 'Gohir.1Z053600' => 'ghi', 'Gohir.A05G009600' => 'ghi', 'Gohir.A05G019400' => 'ghi', 'Gohir.A06G058500' => 'ghi', 'Gohir.A06G133402' => 'ghi', 'Gohir.A10G075300' => 'ghi', 'Gohir.A12G080033' => 'ghi', 'Gohir.A12G080566' => 'ghi', 'Gohir.A12G081099' => 'ghi', 'Gohir.A13G029150' => 'ghi', 'Gohir.A13G029200' => 'ghi', 'Gohir.A13G183550' => 'ghi', 'Gohir.D05G010300' => 'ghi', 'Gohir.D05G020500' => 'ghi', 'Gohir.D06G056801' => 'ghi', 'Gohir.D06G135750' => 'ghi', 'Gohir.D08G096725' => 'ghi', 'Gohir.D10G076200' => 'ghi', 'Gohir.D12G073800' => 'ghi', 'Gohir.D12G073801' => 'ghi', 'Gohir.D12G073804' => 'ghi', 'Gohir.D12G073805' => 'ghi', 'Gohir.D13G027300' => 'ghi', 'Gohir.D13G189828' => 'ghi', 'Gorai.004G103600' => 'gra', 'Gorai.008G081400' => 'gra', 'Gorai.008G081500' => 'gra', 'Gorai.008G081700' => 'gra', 'Gorai.008G081800' => 'gra', 'Gorai.008G081900' => 'gra', 'Gorai.009G010700' => 'gra', 'Gorai.009G020700' => 'gra', 'Gorai.010G066500' => 'gra', 'Gorai.010G157700' => 'gra', 'Gorai.011G082000' => 'gra', 'Gorai.013G031100' => 'gra', 'Gorai.013G031200' => 'gra', 'Gorai.013G215500' => 'gra', 'GSVIVG01011613001' => 'vvi', 'GSVIVG01017296001' => 'vvi', 'GSVIVG01028427001' => 'vvi', 'GSVIVG01033173001' => 'vvi', 'GSVIVG01033174001' => 'vvi', 'GSVIVG01035758001' => 'vvi', 'GSVIVG01035760001' => 'vvi', 'GSVIVG01035762001' => 'vvi', 'GSVIVG01035765001' => 'vvi', 'GSVIVG01035834001' => 'vvi', 'GSVIVG01035835001' => 'vvi', 'HanXRQChr03g0065891' => 'han', 'HanXRQChr03g0065901' => 'han', 'HanXRQChr03g0065911' => 'han', 'HanXRQChr03g0065931' => 'han', 'HanXRQChr03g0065941' => 'han', 'HanXRQChr03g0067761' => 'han', 'HanXRQChr03g0067771' => 'han', 'HanXRQChr03g0074061' => 'han', 'HanXRQChr03g0074081' => 'han', 'HanXRQChr03g0074261' => 'han', 'HanXRQChr03g0074271' => 'han', 'HanXRQChr03g0074281' => 'han', 'HanXRQChr03g0074291' => 'han', 'HanXRQChr03g0074301' => 'han', 'HanXRQChr03g0074321' => 'han', 'HanXRQChr03g0074421' => 'han', 'HanXRQChr03g0074451' => 'han', 'HanXRQChr03g0074461' => 'han', 'HanXRQChr03g0074471' => 'han', 'HanXRQChr06g0179941' => 'han', 'HanXRQChr09g0244331' => 'han', 'HanXRQChr09g0244341' => 'han', 'HanXRQChr10g0305471' => 'han', 'HanXRQChr11g0353681' => 'han', 'HanXRQChr15g0481441' => 'han', 'Haze_01126' => 'cav', 'Haze_03778' => 'cav', 'Haze_03780' => 'cav', 'Haze_03781' => 'cav', 'Haze_03802' => 'cav', 'Haze_09421' => 'cav', 'Haze_12664' => 'cav', 'Haze_12677' => 'cav', 'Haze_12680' => 'cav', 'Haze_21269' => 'cav', 'Haze_21538' => 'cav', 'Haze_21582' => 'cav', 'Haze_21583' => 'cav', 'Haze_21585' => 'cav', 'Haze_21586' => 'cav', 'Haze_22159' => 'cav', 'Haze_22160' => 'cav', 'Haze_22161' => 'cav', 'Haze_22978' => 'cav', 'Haze_25637' => 'cav', 'Hma1.2p1_0365F.1_g136690' => 'hma', 'Hma1.2p1_0526F.1_g172823' => 'hma', 'Hma1.2p1_0526F.1_g172826' => 'hma', 'Hma1.2p1_0665F.1_g199300' => 'hma', 'Hma1.2p1_0921F.1_g236810' => 'hma', 'Hma1.2p1_0921F.1_g236820' => 'hma', 'Hma1.2p1_0921F.1_g236830' => 'hma', 'Hma1.2p1_1855F.1_g305430' => 'hma', 'Hma1.2p1_2452F.1_g322381' => 'hma', 'HPP92_007650' => 'vpl', 'HPP92_009157' => 'vpl', 'HPP92_012435' => 'vpl', 'HPP92_015238' => 'vpl', 'HPP92_017047' => 'vpl', 'HPP92_017048' => 'vpl', 'HPP92_026463' => 'vpl', 'Hund00888' => 'sun', 'Hund03015' => 'sun', 'Hund04536' => 'sun', 'Hund08990' => 'sun', 'Hund08991' => 'sun', 'Hund08992' => 'sun', 'Hund26126' => 'sun', 'Hund26129' => 'sun', 'Hund31231' => 'sun', 'Lalb_Chr11g0072441' => 'lal', 'Lalb_Chr13g0302131' => 'lal', 'Lalb_Chr23g0271861' => 'lal', 'Lj1g0004943' => 'lja', 'Lj1g0017648' => 'lja', 'Lj4g0019246' => 'lja', 'Lj6A733T63' => 'lonja', 'Lsat_1_v5_gn_1_45060' => 'lsa', 'Lsat_1_v5_gn_1_45180' => 'lsa', 'Lsat_1_v5_gn_3_13121' => 'lsa', 'Lsat_1_v5_gn_3_50001' => 'lsa', 'Lsat_1_v5_gn_5_32121' => 'lsa', 'Lsat_1_v5_gn_7_51981' => 'lsa', 'Lsat_1_v5_gn_7_52001' => 'lsa', 'Lsat_1_v5_gn_7_52180' => 'lsa', 'Lsat_1_v5_gn_7_52320' => 'lsa', 'Lsat_1_v5_gn_7_52380' => 'lsa', 'Lsat_1_v5_gn_7_52420' => 'lsa', 'Lsat_1_v5_gn_7_52460' => 'lsa', 'Lsat_1_v5_gn_8_58141' => 'lsa', 'Manes.03G018000' => 'mes', 'Manes.06G050700' => 'mes', 'Manes.10G030600' => 'mes', 'Manes.14G128300' => 'mes', 'Manes.14G131600' => 'mes', 'Manes.14G146800' => 'mes', 'Manes.14G147000' => 'mes', 'Manes.14G147100' => 'mes', 'Manes.15G137300' => 'mes', 'Manes.16G120700' => 'mes', 'Mapoly0039s0112' => 'mpo', 'Mapoly0057s0079' => 'mpo', 'Mapoly0158s0002' => 'mpo', 'Mapoly0218s0010' => 'mpo', 'Mapoly0307s0001' => 'mpo', 'Mapoly0307s0002' => 'mpo', 'Mapoly0307s0003' => 'mpo', 'Mapoly0535s0001' => 'mpo', 'Mapoly0535s0002' => 'mpo', 'MBI01_g34145_MAGBIO' => 'mbi', 'MBI01_g44857_MAGBIO' => 'mbi', 'MBI04_g00945_MAGBIO' => 'mbi', 'MBI04_g08004_MAGBIO' => 'mbi', 'MBI04_g08005_MAGBIO' => 'mbi', 'MBI14_g08073_MAGBIO' => 'mbi', 'MBI14_g08076_MAGBIO' => 'mbi', 'MD02G1013800' => 'mdo', 'MD02G1038100' => 'mdo', 'MD08G1142500' => 'mdo', 'MD08G1147800' => 'mdo', 'MD11G1210900' => 'mdo', 'MD12G1175200' => 'mdo', 'MD12G1175700' => 'mdo', 'MD12G1175900' => 'mdo', 'MD12G1176400' => 'mdo', 'MD15G1119000' => 'mdo', 'MD15G1123700' => 'mdo', 'Medtr3g107500' => 'mtr', 'Medtr3g107770' => 'mtr', 'Medtr6g068780' => 'mtr', 'MELO3C004530.2' => 'cme', 'MELO3C011229.2' => 'cme', 'MELO3C011252.2' => 'cme', 'MELO3C017822.2' => 'cme', 'Migut.A00052' => 'egut', 'Migut.A00304' => 'egut', 'Migut.J01422' => 'egut', 'Migut.J01423' => 'egut', 'Migut.J01424' => 'egut', 'Migut.J01425' => 'egut', 'Migut.J01426' => 'egut', 'MSTRG.11759' => 'ama', 'MSTRG.19683' => 'ama', 'MSTRG.25857' => 'ama', 'Nitab4.5_0000008g0520' => 'nta', 'Nitab4.5_0000008g0540' => 'nta', 'Nitab4.5_0000008g0550' => 'nta', 'Nitab4.5_0000505g0090' => 'nta', 'Nitab4.5_0000508g0180' => 'nta', 'Nitab4.5_0001473g0050' => 'nta', 'Nitab4.5_0002007g0030' => 'nta', 'Nitab4.5_0003160g0100' => 'nta', 'Nitab4.5_0003765g0010' => 'nta', 'Nitab4.5_0004017g0020' => 'nta', 'Nitab4.5_0004017g0040' => 'nta', 'Nitab4.5_0004847g0010' => 'nta', 'Nitab4.5_0004847g0070' => 'nta', 'Nitab4.5_0005292g0010' => 'nta', 'Nitab4.5_0005404g0020' => 'nta', 'Nitab4.5_0005879g0020' => 'nta', 'Nitab4.5_0011660g0010' => 'nta', 'Nitab4.5_0015322g0010' => 'nta', 'Nn2g11919' => 'nnu', 'Nn2g12011' => 'nnu', 'Nn8g39427' => 'nnu', 'Nn8g39428' => 'nnu', 'Oeu008905.1' => 'oeu', 'Oeu016827.1' => 'oeu', 'Oeu016830.1' => 'oeu', 'Oeu016833.1' => 'oeu', 'Oeu016834.1' => 'oeu', 'Oeu024199.1' => 'oeu', 'Oeu030196.1' => 'oeu', 'Oeu031850.1' => 'oeu', 'Oeu031852.1' => 'oeu', 'Oeu040374.1' => 'oeu', 'Oeu042678.1' => 'oeu', 'Oeu043530.1' => 'oeu', 'Oeu043532.1' => 'oeu', 'Oeu045194.1' => 'oeu', 'Os06g0688200' => 'osa', 'Os06g0688300' => 'osa', 'Os08g0485800' => 'osa', 'Os09g0472700' => 'osa', 'Os09g0472900' => 'osa', 'Os09g0473200' => 'osa', 'Peaxi162Scf00073g00918' => 'pax', 'Peaxi162Scf00073g00919' => 'pax', 'Peaxi162Scf00075g01630' => 'pax', 'Peaxi162Scf00384g00031' => 'pax', 'Peaxi162Scf00384g00036' => 'pax', 'Peaxi162Scf00841g00025' => 'pax', 'Peaxi162Scf00841g00039' => 'pax', 'PGR044G0388' => 'pgr', 'PGR044G0863' => 'pgr', 'PGR044G2005' => 'pgr', 'PGR044G2391' => 'pgr', 'PGR102G2589' => 'pgr', 'PGR142G1226' => 'pgr', 'PGSC0003DMG400007384' => 'stu', 'PGSC0003DMG400011227' => 'stu', 'PGSC0003DMG400026083' => 'stu', 'PGSC0003DMG400041852' => 'stu', 'Phvul.003G160600' => 'pvu', 'Phvul.009G094000' => 'pvu', 'Phvul.009G096000' => 'pvu', 'Potri.003G218300' => 'ptr', 'Potri.006G155000' => 'ptr', 'Potri.006G176300' => 'ptr', 'Potri.006G179300' => 'ptr', 'Potri.006G249500' => 'ptr', 'Potri.006G252200' => 'ptr', 'Potri.018G029100' => 'ptr', 'Potri.018G031901' => 'ptr', 'Potri.018G098200' => 'ptr', 'Potri.018G101600' => 'ptr', 'Pp3c11_1420' => 'ppa', 'Pp3c13_20039' => 'ppa', 'Pp3c2_9570' => 'ppa', 'Pp3c7_25120' => 'ppa', 'Prupe.1G065400' => 'ppe', 'Prupe.1G096800' => 'ppe', 'Prupe.1G096900' => 'ppe', 'Prupe.1G097000' => 'ppe', 'Prupe.1G472300' => 'ppe', 'Prupe.1G479000' => 'ppe', 'Prupe.7G237200' => 'ppe', 'Psat5g027280' => 'psa', 'Psat5g028640' => 'psa', 'PSO017G2057' => 'pso', 'PSO017G3944' => 'pso', 'PSO017G4716' => 'pso', 'PSO017G6844' => 'pso', 'PSO170G4249' => 'pso', 'PSO210G0187' => 'pso', 'PSO210G4117' => 'pso', 'PSO242G0011' => 'pso', 'PSO242G0042' => 'pso', 'PSO675G1488' => 'pso', 'QL02p022146' => 'qlo', 'QL02p022170' => 'qlo', 'QL02p022201' => 'qlo', 'QL02p023213' => 'qlo', 'QL02p023255' => 'qlo', 'QL02p023289' => 'qlo', 'QL02p023295' => 'qlo', 'QL02p023316' => 'qlo', 'QL02p087120' => 'qlo', 'QL02p091475' => 'qlo', 'QL02p091489' => 'qlo', 'QL02p091499' => 'qlo', 'QL02p095754' => 'qlo', 'QL02p095769' => 'qlo', 'QL02p095791' => 'qlo', 'QL02p095800' => 'qlo', 'QL02p095803' => 'qlo', 'QL02p095866' => 'qlo', 'QL03p013281' => 'qlo', 'QL03p013335' => 'qlo', 'QL03p013388' => 'qlo', 'QL03p015812' => 'qlo', 'QL03p015844' => 'qlo', 'QL03p015900' => 'qlo', 'QL03p016011' => 'qlo', 'QL03p016050' => 'qlo', 'QL03p038574' => 'qlo', 'QL03p040095' => 'qlo', 'QL03p040171' => 'qlo', 'RcHm_v2.0_Chr2g0089451' => 'rch', 'RcHm_v2.0_Chr4g0404821' => 'rch', 'RcHm_v2.0_Chr4g0404841' => 'rch', 'RcHm_v2.0_Chr4g0404861' => 'rch', 'RcHm_v2.0_Chr6g0298751' => 'rch', 'RcHm_v2.0_Chr7g0222801' => 'rch', 'RcHm_v2.0_Chr7g0224401' => 'rch', 'Rhsim01G0010500' => 'rsi', 'Rhsim01G0010600' => 'rsi', 'Rhsim01G0011700' => 'rsi', 'Rhsim01G0074000' => 'rsi', 'Rhsim01G0087300' => 'rsi', 'Rhsim01G0087900' => 'rsi', 'Rhsim02G0193500' => 'rsi', 'Rhsim03G0054500' => 'rsi', 'RhsimUnG0079400' => 'rsi', 'Sabra06G0122800' => 'sbr', 'Sabra06G0134500' => 'sbr', 'Sabra06G0136500' => 'sbr', 'Sabra06G0195300' => 'sbr', 'Sabra18G0031200' => 'sbr', 'Sabra18G0032800' => 'sbr', 'Sabra18G0084900' => 'sbr', 'SalBow4G1889' => 'sbo', 'SalBow4G1924' => 'sbo', 'SalBow6G0184' => 'sbo', 'SalBow6G0910' => 'sbo', 'SalBow6G1145' => 'sbo', 'SalBow6G2111' => 'sbo', 'SalBow6G2785' => 'sbo', 'SalBow6G3290' => 'sbo', 'SalBow6G3384' => 'sbo', 'SalBow6G4877' => 'sbo', 'SalBow6G6287' => 'sbo', 'SalBow6G6968' => 'sbo', 'Sc14g0000360' => 'sci', 'Sc23g0003440' => 'sci', 'Sed0000578' => 'sed', 'Sed0012822' => 'sed', 'Sed0022501' => 'sed', 'SEGI_02169' => 'sgi', 'SEGI_07106' => 'sgi', 'SEGI_10066' => 'sgi', 'SEGI_17835' => 'sgi', 'SEGI_26291' => 'sgi', 'SEGI_28895' => 'sgi', 'SEGI_36688' => 'sgi', 'SEGI_37472' => 'sgi', 'SEGI_40240' => 'sgi', 'SGA_v2.0_scaffold22G09940' => 'sas', 'SGA_v2.0_scaffold448G51764' => 'sas', 'SGA_v2.0_scaffold66G22512' => 'sas', 'SHI12433' => 'shi', 'SMO174G0112' => 'smo', 'SMO174G0207' => 'smo', 'SMO201G0037' => 'smo', 'SMO201G0187' => 'smo', 'SMO201G0210' => 'smo', 'SMO201G0226' => 'smo', 'SMO201G0235' => 'smo', 'SMO328G0030' => 'smo', 'SMO339G0038' => 'smo', 'SMO364G0306' => 'smo', 'SMO367G0327' => 'smo', 'SMO367G1288' => 'smo', 'Solyc07g006390.3' => 'sly', 'Solyc07g006395.2' => 'sly', 'Solyc08g061060.3' => 'sly', 'Solyc08g067390.4' => 'sly', 'Sopen06g024130' => 'spe', 'Sopen07g002480' => 'spe', 'Sopen07g002490' => 'spe', 'Sopen08g016300' => 'spe', 'Sopen08g021320' => 'spe', 'Sp3g32150' => 'spa', 'Sp7g28250' => 'spa', 'Sp7g28260' => 'spa', 'TAR371G0993' => 'tar', 'TAR383G0255' => 'tar', 'TAR383G0545' => 'tar', 'TAR416G0003' => 'tar', 'TAR625G0101' => 'tar', 'TAR625G0423' => 'tar', 'TAR625G1005' => 'tar', 'TAR626G0485' => 'tar', 'THA.LOC104799231' => 'tha', 'THA.LOC104803515' => 'tha', 'THA.LOC104809009' => 'tha', 'THA.LOC104819985' => 'tha', 'Thecc.06G069400' => 'tca', 'Thecc.09G009000' => 'tca', 'Thecc.09G027400' => 'tca', 'Thecc.09G119800' => 'tca', 'Thecc.09G148100' => 'tca', 'Thecc.09G150900' => 'tca', 'Thecc.09G161800' => 'tca', 'Thecc.09G162000' => 'tca', 'Thecc.09G162100' => 'tca', 'Thhalv10022910m.g' => 'esa', 'Thhalv10026568m.g' => 'esa', 'Thhalv10027279m.g' => 'esa', 'TPR.G22005' => 'tpr', 'TPR.G28553' => 'tpr', 'TPR.G28620' => 'tpr', 'TWI32G0133' => 'twi', 'TWI32G0298' => 'twi', 'TWI32G0399' => 'twi', 'TWI32G0876' => 'twi', 'TWI32G1063' => 'twi', 'TWI32G1139' => 'twi', 'TWI32G1246' => 'twi', 'TWI34G0053' => 'twi', 'TWI34G0196' => 'twi', 'TWI34G0370' => 'twi', 'TWI34G1050' => 'twi', 'TWI34G1912' => 'twi', 'TWI34G1963' => 'twi', 'TWI53G0846' => 'twi', 'TWI63G0327' => 'twi', 'TWI63G1447' => 'twi', 'unitig_37.g12593' => 'ugi', 'vmacro11132' => 'vma', 'vmacro13077' => 'vma', 'vmacro13078' => 'vma', 'vmacro13079' => 'vma', 'vmacro20546' => 'vma', 'VMungo0647G0705' => 'vmu', 'VMungo1215G1491' => 'vmu', 'VMungo1309G0686' => 'vmu', 'VMungo1309G1379' => 'vmu', 'Zm00001eb273420' => 'zma', 'Zm00001eb315810' => 'zma' ) $gf_id = 'HOM05D000852' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000852' ) $data_identifier = 'HOM05D000852' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 5, 'aar' => (int) 1, 'aag' => (int) 3, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 2, 'aox' => (int) 7, 'arhy' => (int) 9, 'ath' => (int) 2, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 5, 'bol' => (int) 3, 'bra' => (int) 2, 'can' => (int) 4, 'cansat' => (int) 6, 'chi' => (int) 2, 'cru' => (int) 2, 'car' => (int) 1, 'ccan' => (int) 8, 'cde' => (int) 5, 'cfa' => (int) 8, 'ccl' => (int) 14, 'cil' => (int) 9, 'cla' => (int) 5, 'col' => (int) 14, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 3, 'din' => (int) 27, 'dzi' => (int) 13, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 14, 'fan' => (int) 9, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 11, 'han' => (int) 25, 'cav' => (int) 20, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 9, 'lal' => (int) 3, 'lja' => (int) 3, 'lonja' => (int) 1, 'lsa' => (int) 13, 'mes' => (int) 10, 'mpo' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 3, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 14, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 2, 'pso' => (int) 10, 'qlo' => (int) 29, 'rch' => (int) 7, 'rsi' => (int) 9, 'sbr' => (int) 7, 'sbo' => (int) 12, 'sci' => (int) 2, 'sed' => (int) 3, 'sgi' => (int) 9, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 12, 'sly' => (int) 4, 'spe' => (int) 5, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 9, 'esa' => (int) 3, 'tpr' => (int) 3, 'twi' => (int) 16, 'ugi' => (int) 1, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 2 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb315810' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1